Reference

• Glossary

  GEM, FBA, FVA, pFBA, flux, bounds, objective, template, identifier mapping and other terms.

• FAQ

  Short answers to common questions.

• Troubleshooting

  What to do when the backend is offline, a model does not load or a solve is infeasible.

• Limitations

  What GEMs MAP does not do, and what its results do not mean.

• Roadmap

  Planned features, including solver selection and flux sampling.

• About the examples

  The model, conditions and software versions behind the screenshots.

• Technical notes

  Specifications for developers: the template mapping engine, the Template Builder and file format, and the metabolite annotation curation.

• Contributing to the docs

  How to build, preview and update these pages and their screenshots.